Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
RAE1P78406 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 AC080080.1-201ENST00000625121 2420 ntBASIC16.89■□□□□ 0.29
RAE1P78406 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.89■□□□□ 0.29
RAE1P78406 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RAE1P78406 AC096633.1-201ENST00000422446 749 ntBASIC16.89■□□□□ 0.29
RAE1P78406 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.89■□□□□ 0.29
RAE1P78406 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
RAE1P78406 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
RAE1P78406 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 BX276092.7-203ENST00000637198 1536 ntBASIC16.89■□□□□ 0.29
RAE1P78406 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.89■□□□□ 0.29
RAE1P78406 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
RAE1P78406 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.89■□□□□ 0.29
RAE1P78406 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.89■□□□□ 0.29
RAE1P78406 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RAE1P78406 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.88■□□□□ 0.29
RAE1P78406 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.88■□□□□ 0.29
RAE1P78406 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.88■□□□□ 0.29
RAE1P78406 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.88■□□□□ 0.29
RAE1P78406 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
RAE1P78406 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.88■□□□□ 0.29
RAE1P78406 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RAE1P78406 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 AC005104.2-201ENST00000427818 678 ntBASIC16.88■□□□□ 0.29
RAE1P78406 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.88■□□□□ 0.29
RAE1P78406 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.88■□□□□ 0.29
RAE1P78406 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
RAE1P78406 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RAE1P78406 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RAE1P78406 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.87■□□□□ 0.29
RAE1P78406 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
RAE1P78406 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.87■□□□□ 0.29
RAE1P78406 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.87■□□□□ 0.29
RAE1P78406 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.87■□□□□ 0.29
RAE1P78406 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
RAE1P78406 RN7SL606P-201ENST00000472779 293 ntBASIC16.87■□□□□ 0.29
RAE1P78406 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.87■□□□□ 0.29
RAE1P78406 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.87■□□□□ 0.29
RAE1P78406 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.87■□□□□ 0.29
RAE1P78406 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.87■□□□□ 0.29
RAE1P78406 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.87■□□□□ 0.29
RAE1P78406 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.87■□□□□ 0.29
RAE1P78406 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.87■□□□□ 0.29
RAE1P78406 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RAE1P78406 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
RAE1P78406 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
RAE1P78406 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
RAE1P78406 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RAE1P78406 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RAE1P78406 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RAE1P78406 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.86■□□□□ 0.29
RAE1P78406 AC010460.3-201ENST00000511359 1579 ntBASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms