Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CTCFP49711 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.55■□□□□ 0.88
CTCFP49711 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 BSG-215ENST00000618006 1329 ntTSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.54■□□□□ 0.88
CTCFP49711 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.54■□□□□ 0.88
CTCFP49711 SLC25A39P2-201ENST00000537614 270 ntBASIC20.54■□□□□ 0.88
CTCFP49711 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC20.54■□□□□ 0.88
CTCFP49711 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.54■□□□□ 0.88
CTCFP49711 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 KRT8P47-201ENST00000604727 1398 ntBASIC20.54■□□□□ 0.88
CTCFP49711 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CTCFP49711 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.54■□□□□ 0.88
CTCFP49711 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.54■□□□□ 0.88
CTCFP49711 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CTCFP49711 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CTCFP49711 TUBB3P1-201ENST00000405796 1332 ntBASIC20.53■□□□□ 0.88
CTCFP49711 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC20.53■□□□□ 0.88
CTCFP49711 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CTCFP49711 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 SPDYE22P-201ENST00000582158 798 ntBASIC20.53■□□□□ 0.88
CTCFP49711 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CTCFP49711 AC023141.13-201ENST00000604991 943 ntBASIC20.53■□□□□ 0.88
CTCFP49711 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.53■□□□□ 0.88
CTCFP49711 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CTCFP49711 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.53■□□□□ 0.88
CTCFP49711 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.52■□□□□ 0.88
CTCFP49711 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.52■□□□□ 0.88
CTCFP49711 KLF2P3-201ENST00000451977 1087 ntBASIC20.52■□□□□ 0.88
CTCFP49711 AL512638.1-201ENST00000457493 794 ntBASIC20.52■□□□□ 0.88
CTCFP49711 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.52■□□□□ 0.88
CTCFP49711 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.52■□□□□ 0.88
CTCFP49711 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.52■□□□□ 0.88
CTCFP49711 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.52■□□□□ 0.88
CTCFP49711 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.52■□□□□ 0.88
CTCFP49711 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CTCFP49711 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.52■□□□□ 0.88
CTCFP49711 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC20.52■□□□□ 0.88
CTCFP49711 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CTCFP49711 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CTCFP49711 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.87
CTCFP49711 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.51■□□□□ 0.87
CTCFP49711 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CTCFP49711 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CTCFP49711 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms