Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.57■□□□□ 0.72
COL6A1P12109 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A1P12109 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A1P12109 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.57■□□□□ 0.72
COL6A1P12109 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL6A1P12109 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A1P12109 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A1P12109 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A1P12109 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
COL6A1P12109 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL6A1P12109 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
COL6A1P12109 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A1P12109 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.56■□□□□ 0.72
COL6A1P12109 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A1P12109 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.56■□□□□ 0.72
COL6A1P12109 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.56■□□□□ 0.72
COL6A1P12109 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
COL6A1P12109 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A1P12109 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL6A1P12109 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.56■□□□□ 0.72
COL6A1P12109 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A1P12109 AC015911.4-201ENST00000588022 1070 ntBASIC19.56■□□□□ 0.72
COL6A1P12109 AC022145.2-201ENST00000598203 171 ntBASIC19.56■□□□□ 0.72
COL6A1P12109 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.56■□□□□ 0.72
COL6A1P12109 AJ011932.1-201ENST00000621707 465 ntBASIC19.56■□□□□ 0.72
COL6A1P12109 AL035252.4-201ENST00000624174 288 ntBASIC19.56■□□□□ 0.72
COL6A1P12109 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL6A1P12109 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A1P12109 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A1P12109 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A1P12109 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL6A1P12109 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A1P12109 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 AC015922.1-201ENST00000421102 1152 ntBASIC19.55■□□□□ 0.72
COL6A1P12109 AC023141.5-201ENST00000458585 616 ntBASIC19.55■□□□□ 0.72
COL6A1P12109 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A1P12109 AC069262.1-201ENST00000539058 672 ntBASIC19.55■□□□□ 0.72
COL6A1P12109 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A1P12109 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A1P12109 LINC00628-201ENST00000628516 1289 ntBASIC19.55■□□□□ 0.72
COL6A1P12109 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
COL6A1P12109 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A1P12109 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A1P12109 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
COL6A1P12109 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A1P12109 AC005034.1-201ENST00000426657 489 ntBASIC19.54■□□□□ 0.72
COL6A1P12109 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.54■□□□□ 0.72
COL6A1P12109 SIGLEC30P-201ENST00000455569 941 ntBASIC19.54■□□□□ 0.72
COL6A1P12109 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.54■□□□□ 0.72
COL6A1P12109 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.54■□□□□ 0.72
COL6A1P12109 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.54■□□□□ 0.72
COL6A1P12109 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A1P12109 AC023141.13-201ENST00000604991 943 ntBASIC19.54■□□□□ 0.72
COL6A1P12109 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A1P12109 REXO1L3P-201ENST00000622202 1288 ntBASIC19.54■□□□□ 0.72
COL6A1P12109 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A1P12109 AC007064.4-201ENST00000637740 555 ntBASIC19.54■□□□□ 0.72
COL6A1P12109 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A1P12109 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL6A1P12109 SIRPAP1-201ENST00000448467 1770 ntBASIC19.54■□□□□ 0.72
COL6A1P12109 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A1P12109 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A1P12109 AC063926.2-201ENST00000623766 1308 ntBASIC19.53■□□□□ 0.72
COL6A1P12109 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A1P12109 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
COL6A1P12109 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A1P12109 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms