Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 BX276092.7-203ENST00000637198 1536 ntBASIC20.62■□□□□ 0.89
CTDNEP1O95476 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.62■□□□□ 0.89
CTDNEP1O95476 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CTDNEP1O95476 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CTDNEP1O95476 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CTDNEP1O95476 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 GUSBP12-201ENST00000513727 720 ntBASIC20.6■□□□□ 0.89
CTDNEP1O95476 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 AP005901.3-202ENST00000581653 237 ntBASIC20.6■□□□□ 0.89
CTDNEP1O95476 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.6■□□□□ 0.89
CTDNEP1O95476 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 AC125634.1-201ENST00000438758 1403 ntBASIC20.6■□□□□ 0.89
CTDNEP1O95476 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CTDNEP1O95476 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.59■□□□□ 0.89
CTDNEP1O95476 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 AC007967.3-201ENST00000434308 558 ntBASIC20.59■□□□□ 0.89
CTDNEP1O95476 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 AL138831.2-201ENST00000606564 490 ntBASIC20.59■□□□□ 0.89
CTDNEP1O95476 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 LYSMD4-203ENST00000378904 2122 ntBASIC20.59■□□□□ 0.89
CTDNEP1O95476 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTDNEP1O95476 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CTDNEP1O95476 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CTDNEP1O95476 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CTDNEP1O95476 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.58■□□□□ 0.89
CTDNEP1O95476 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 COX5BP2-201ENST00000392354 334 ntBASIC20.58■□□□□ 0.89
CTDNEP1O95476 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.58■□□□□ 0.89
CTDNEP1O95476 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.58■□□□□ 0.89
CTDNEP1O95476 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.58■□□□□ 0.89
CTDNEP1O95476 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CTDNEP1O95476 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTDNEP1O95476 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.88
CTDNEP1O95476 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CTDNEP1O95476 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CTDNEP1O95476 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CTDNEP1O95476 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CTDNEP1O95476 AC106820.2-201ENST00000563775 3264 ntBASIC20.58■□□□□ 0.88
CTDNEP1O95476 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTDNEP1O95476 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.57■□□□□ 0.88
CTDNEP1O95476 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTDNEP1O95476 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms