Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 SPDYE7P-202ENST00000420373 878 ntBASIC7.87□□□□□ -1.15
USH2AO75445 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC7.87□□□□□ -1.15
USH2AO75445 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
USH2AO75445 SNX29P1-201ENST00000548357 1007 ntBASIC7.87□□□□□ -1.15
USH2AO75445 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC7.87□□□□□ -1.15
USH2AO75445 AL162274.1-201ENST00000617191 1098 ntBASIC7.87□□□□□ -1.15
USH2AO75445 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
USH2AO75445 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC7.87□□□□□ -1.15
USH2AO75445 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 AC100757.3-201ENST00000622361 1406 ntBASIC7.87□□□□□ -1.15
USH2AO75445 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC7.87□□□□□ -1.15
USH2AO75445 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC7.87□□□□□ -1.15
USH2AO75445 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 AC140912.1-201ENST00000577171 1054 ntBASIC7.87□□□□□ -1.15
USH2AO75445 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 MED16-214ENST00000617672 554 ntTSL 5 BASIC7.87□□□□□ -1.15
USH2AO75445 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 MXI1-205ENST00000393134 889 ntTSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC7.87□□□□□ -1.15
USH2AO75445 AL135744.1-201ENST00000565098 629 ntBASIC7.87□□□□□ -1.15
USH2AO75445 AC008494.3-201ENST00000606615 944 ntBASIC7.87□□□□□ -1.15
USH2AO75445 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC7.87□□□□□ -1.15
USH2AO75445 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
USH2AO75445 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 LINC01006-201ENST00000333319 2292 ntBASIC7.87□□□□□ -1.15
USH2AO75445 FEM1AP3-201ENST00000403722 1741 ntBASIC7.87□□□□□ -1.15
USH2AO75445 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC7.87□□□□□ -1.15
USH2AO75445 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 AC008735.3-201ENST00000596646 500 ntBASIC7.87□□□□□ -1.15
USH2AO75445 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
USH2AO75445 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
USH2AO75445 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
USH2AO75445 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
USH2AO75445 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 VMA21-202ENST00000370361 693 ntTSL 5 BASIC7.86□□□□□ -1.15
USH2AO75445 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC7.86□□□□□ -1.15
USH2AO75445 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 AC022210.1-201ENST00000449856 793 ntBASIC7.86□□□□□ -1.15
USH2AO75445 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC7.86□□□□□ -1.15
USH2AO75445 BNIP3P42-201ENST00000454982 569 ntBASIC7.86□□□□□ -1.15
USH2AO75445 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 BNIP3P29-201ENST00000598302 571 ntBASIC7.86□□□□□ -1.15
USH2AO75445 AC011447.5-201ENST00000616168 564 ntBASIC7.86□□□□□ -1.15
USH2AO75445 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC7.86□□□□□ -1.15
USH2AO75445 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC7.86□□□□□ -1.15
USH2AO75445 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC7.86□□□□□ -1.15
USH2AO75445 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 FALEC-201ENST00000416894 566 ntTSL 3 BASIC7.86□□□□□ -1.15
USH2AO75445 TSSK5P-201ENST00000423978 907 ntBASIC7.86□□□□□ -1.15
USH2AO75445 KRT18P65-201ENST00000439811 1286 ntBASIC7.86□□□□□ -1.15
USH2AO75445 AC122714.2-201ENST00000502787 707 ntBASIC7.86□□□□□ -1.15
USH2AO75445 GATD1-206ENST00000526325 756 ntTSL 5 BASIC7.86□□□□□ -1.15
USH2AO75445 AC106886.1-201ENST00000568660 600 ntBASIC7.86□□□□□ -1.15
USH2AO75445 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC7.86□□□□□ -1.15
USH2AO75445 ACTL9-202ENST00000612068 1252 ntBASIC7.86□□□□□ -1.15
USH2AO75445 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC7.86□□□□□ -1.15
USH2AO75445 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms