Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS4BO75351 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4BO75351 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS4BO75351 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS4BO75351 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
VPS4BO75351 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
VPS4BO75351 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 FZD10-202ENST00000539839 3282 ntBASIC17.49■□□□□ 0.39
VPS4BO75351 AC099343.3-201ENST00000605834 2503 ntBASIC17.49■□□□□ 0.39
VPS4BO75351 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.49■□□□□ 0.39
VPS4BO75351 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4BO75351 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4BO75351 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4BO75351 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.49■□□□□ 0.39
VPS4BO75351 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS4BO75351 CR769767.2-201ENST00000622735 460 ntBASIC17.49■□□□□ 0.39
VPS4BO75351 AC112497.1-201ENST00000624824 639 ntBASIC17.49■□□□□ 0.39
VPS4BO75351 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS4BO75351 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
VPS4BO75351 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS4BO75351 AC139713.2-201ENST00000641328 2723 ntBASIC17.49■□□□□ 0.39
VPS4BO75351 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS4BO75351 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4BO75351 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS4BO75351 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4BO75351 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS4BO75351 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS4BO75351 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4BO75351 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4BO75351 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS4BO75351 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4BO75351 AP003041.3-201ENST00000527151 707 ntBASIC17.48■□□□□ 0.39
VPS4BO75351 AC008687.5-201ENST00000593746 558 ntBASIC17.48■□□□□ 0.39
VPS4BO75351 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS4BO75351 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
VPS4BO75351 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS4BO75351 AC012313.10-201ENST00000623509 926 ntBASIC17.48■□□□□ 0.39
VPS4BO75351 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
VPS4BO75351 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS4BO75351 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
VPS4BO75351 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS4BO75351 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS4BO75351 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.47■□□□□ 0.39
VPS4BO75351 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms