Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC24.86■■□□□ 1.57
NPHP4O75161 COX5BP8-201ENST00000416911 349 ntBASIC24.86■■□□□ 1.57
NPHP4O75161 RN7SL589P-201ENST00000481268 310 ntBASIC24.86■■□□□ 1.57
NPHP4O75161 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
NPHP4O75161 AC109462.3-201ENST00000573934 613 ntBASIC24.86■■□□□ 1.57
NPHP4O75161 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
NPHP4O75161 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
NPHP4O75161 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC24.86■■□□□ 1.57
NPHP4O75161 AL358472.5-202ENST00000641448 1267 ntBASIC24.86■■□□□ 1.57
NPHP4O75161 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
NPHP4O75161 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
NPHP4O75161 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
NPHP4O75161 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
NPHP4O75161 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
NPHP4O75161 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
NPHP4O75161 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
NPHP4O75161 COQ6-210ENST00000554920 649 ntTSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 SPDYE22P-201ENST00000582158 798 ntBASIC24.85■■□□□ 1.57
NPHP4O75161 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
NPHP4O75161 BSG-214ENST00000614867 960 ntTSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 AC025048.6-201ENST00000634326 1161 ntBASIC24.85■■□□□ 1.57
NPHP4O75161 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
NPHP4O75161 AC093010.1-201ENST00000473625 1624 ntBASIC24.84■■□□□ 1.57
NPHP4O75161 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
NPHP4O75161 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
NPHP4O75161 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
NPHP4O75161 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC24.84■■□□□ 1.57
NPHP4O75161 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
NPHP4O75161 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC24.84■■□□□ 1.57
NPHP4O75161 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 AL671277.1-201ENST00000429656 993 ntBASIC24.84■■□□□ 1.57
NPHP4O75161 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC24.84■■□□□ 1.57
NPHP4O75161 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC24.84■■□□□ 1.57
NPHP4O75161 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC24.84■■□□□ 1.57
NPHP4O75161 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC24.84■■□□□ 1.57
NPHP4O75161 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC24.84■■□□□ 1.57
NPHP4O75161 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 TMED1-207ENST00000591695 809 ntTSL 5 BASIC24.84■■□□□ 1.57
NPHP4O75161 AL158211.3-201ENST00000607385 239 ntBASIC24.84■■□□□ 1.57
NPHP4O75161 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC24.84■■□□□ 1.57
NPHP4O75161 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
NPHP4O75161 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
NPHP4O75161 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
NPHP4O75161 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
NPHP4O75161 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
NPHP4O75161 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
NPHP4O75161 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC24.83■■□□□ 1.57
NPHP4O75161 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
NPHP4O75161 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC24.83■■□□□ 1.57
NPHP4O75161 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC24.83■■□□□ 1.57
NPHP4O75161 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC24.83■■□□□ 1.57
NPHP4O75161 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC24.83■■□□□ 1.57
NPHP4O75161 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC24.83■■□□□ 1.57
NPHP4O75161 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC24.83■■□□□ 1.57
NPHP4O75161 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
NPHP4O75161 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
NPHP4O75161 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
NPHP4O75161 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
NPHP4O75161 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
NPHP4O75161 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC24.82■■□□□ 1.56
NPHP4O75161 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC24.82■■□□□ 1.56
NPHP4O75161 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC24.82■■□□□ 1.56
NPHP4O75161 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC24.82■■□□□ 1.56
NPHP4O75161 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC24.82■■□□□ 1.56
NPHP4O75161 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
NPHP4O75161 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC24.82■■□□□ 1.56
NPHP4O75161 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.82■■□□□ 1.56
NPHP4O75161 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.81■■□□□ 1.56
NPHP4O75161 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC24.81■■□□□ 1.56
NPHP4O75161 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
NPHP4O75161 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC24.81■■□□□ 1.56
NPHP4O75161 AC140658.5-201ENST00000438532 169 ntBASIC24.81■■□□□ 1.56
NPHP4O75161 IGHV3-42-201ENST00000520410 361 ntBASIC24.81■■□□□ 1.56
NPHP4O75161 AC243562.1-201ENST00000560672 389 ntBASIC24.81■■□□□ 1.56
NPHP4O75161 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.81■■□□□ 1.56
NPHP4O75161 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
NPHP4O75161 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC24.81■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms