Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
TMX2-CTNND1H3BSU7 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TMX2-CTNND1H3BSU7 AL357033.4-201ENST00000617703 1807 ntBASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.51■□□□□ 0.39
TMX2-CTNND1H3BSU7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 HLA-A-201ENST00000376802 1334 ntBASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 AKR1C7P-201ENST00000305623 895 ntBASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 MIR149-201ENST00000384879 89 ntBASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 MIR5100-201ENST00000579544 119 ntBASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC004263.2-201ENST00000617183 678 ntBASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.5■□□□□ 0.39
TMX2-CTNND1H3BSU7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms