Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 HLA-J-201ENST00000462773 1622 ntBASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TRIM49BA6NDI0 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
TRIM49BA6NDI0 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
TRIM49BA6NDI0 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TRIM49BA6NDI0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 FAM8A6P-201ENST00000407496 1135 ntBASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 TSPY12P-201ENST00000421279 868 ntBASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 SPDYE13P-201ENST00000445314 798 ntBASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 ZNF444P1-201ENST00000559497 298 ntBASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 AC009154.2-201ENST00000621177 724 ntBASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 AL138688.1-201ENST00000624851 1594 ntBASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRIM49BA6NDI0 AC090340.1-201ENST00000620778 4980 ntBASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 AL023806.1-201ENST00000603994 1649 ntBASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 AC112698.1-201ENST00000510299 916 ntBASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 RNF126P1-202ENST00000569893 925 ntBASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 LINC01023-201ENST00000606054 436 ntBASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TRIM49BA6NDI0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 AL353692.3-201ENST00000407031 1396 ntBASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 AC116407.2-201ENST00000613639 860 ntBASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.62■□□□□ 0.73
TRIM49BA6NDI0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms