Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 SLC25A3P1-201ENST00000443844 931 ntBASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV27A0A087WT01 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 AL023806.1-201ENST00000603994 1649 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 RASA4DP-201ENST00000460726 1199 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 AC113404.2-201ENST00000507884 177 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 AC010203.1-204ENST00000548782 407 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 AC024563.2-201ENST00000603282 481 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 AC079602.3-201ENST00000623931 403 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 PCDHA12-202ENST00000613593 2588 ntBASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV27A0A087WT01 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 LINC00304-203ENST00000565008 1864 ntBASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 LIN28AP1-201ENST00000429574 405 ntBASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.16■□□□□ 0.18
TRAV27A0A087WT01 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms