Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDHB3Q9Y5E6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 MYLKP1-201ENST00000509077 1580 ntBASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 AP002383.4-201ENST00000442518 975 ntBASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 MIR3180-1-201ENST00000580374 94 ntBASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 MIR3180-3-201ENST00000584616 94 ntBASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDHB3Q9Y5E6 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 AC024563.2-201ENST00000603282 481 ntBASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 KRT89P-201ENST00000620027 1478 ntBASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCDHB3Q9Y5E6 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 Z83836.1-201ENST00000624605 1642 ntBASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 AC106820.2-201ENST00000563775 3264 ntBASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 AL845331.1-201ENST00000424978 1190 ntBASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 AC005332.3-201ENST00000589904 676 ntBASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 AL390719.2-201ENST00000606993 987 ntBASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCDHB3Q9Y5E6 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms