Protein–RNA interactions for Protein: Q9UPX8

SHANK2, SH3 and multiple ankyrin repeat domains protein 2, humanhuman

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2Q9UPX8 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 KRT18P55-202ENST00000578578 1546 ntBASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SHANK2Q9UPX8 KRT18P28-201ENST00000453838 1332 ntBASIC26.33■■□□□ 1.8
SHANK2Q9UPX8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 AC239800.4-201ENST00000603712 296 ntBASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHANK2Q9UPX8 FLJ13224-201ENST00000313737 1514 ntBASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
SHANK2Q9UPX8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 FAM8A3P-201ENST00000427218 844 ntBASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 IGHV3-52-201ENST00000519770 353 ntBASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 OR7E47P-204ENST00000575924 449 ntBASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 MTDHP5-201ENST00000598980 586 ntBASIC26.3■■□□□ 1.8
SHANK2Q9UPX8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 MRPL20P1-201ENST00000400819 433 ntBASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 AC018845.2-201ENST00000568326 409 ntBASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHANK2Q9UPX8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 VN2R19P-201ENST00000442399 1052 ntBASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC26.28■■□□□ 1.8
SHANK2Q9UPX8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms