Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC019129.2-201ENST00000609837 1235 ntBASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC012645.4-201ENST00000610691 1061 ntBASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 PKD1P6-201ENST00000343738 4769 ntBASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 ESPNP-201ENST00000270691 2015 ntBASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ZNF541Q9H0D2 AC006116.8-202ENST00000587620 1550 ntBASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ZNF541Q9H0D2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 AL353135.1-201ENST00000606729 504 ntBASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 GGTLC5P-201ENST00000617623 998 ntBASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
ZNF541Q9H0D2 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 MIR661-201ENST00000384842 89 ntBASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 AC015911.4-201ENST00000588022 1070 ntBASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
ZNF541Q9H0D2 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.2■□□□□ 0.99
ZNF541Q9H0D2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 AC236430.1-201ENST00000402231 743 ntBASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 AC009093.7-201ENST00000623853 1223 ntBASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
ZNF541Q9H0D2 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms