Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 AC116407.2-201ENST00000613639 860 ntBASIC16.03■□□□□ 0.16
CPNE4Q96A23 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
CPNE4Q96A23 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CPNE4Q96A23 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 NUS1P1-201ENST00000446295 882 ntBASIC16.02■□□□□ 0.16
CPNE4Q96A23 MINOS1P3-201ENST00000457048 203 ntBASIC16.02■□□□□ 0.16
CPNE4Q96A23 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 PRELID1P1-202ENST00000567272 903 ntBASIC16.02■□□□□ 0.16
CPNE4Q96A23 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
CPNE4Q96A23 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CPNE4Q96A23 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.02■□□□□ 0.15
CPNE4Q96A23 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.02■□□□□ 0.15
CPNE4Q96A23 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
CPNE4Q96A23 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CPNE4Q96A23 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 AC138028.4-201ENST00000564984 1845 ntBASIC16.01■□□□□ 0.15
CPNE4Q96A23 FZD10-202ENST00000539839 3282 ntBASIC16.01■□□□□ 0.15
CPNE4Q96A23 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 AC007613.1-201ENST00000572811 2597 ntBASIC16.01■□□□□ 0.15
CPNE4Q96A23 AL354751.1-201ENST00000412768 1863 ntBASIC16.01■□□□□ 0.15
CPNE4Q96A23 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CPNE4Q96A23 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.01■□□□□ 0.15
CPNE4Q96A23 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms