Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TM9SF4Q92544 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TM9SF4Q92544 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 ESPNP-201ENST00000270691 2015 ntBASIC16.86■□□□□ 0.29
TM9SF4Q92544 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 AC009078.2-202ENST00000463353 338 ntBASIC16.86■□□□□ 0.29
TM9SF4Q92544 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 AC104692.2-201ENST00000603054 253 ntBASIC16.86■□□□□ 0.29
TM9SF4Q92544 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.86■□□□□ 0.29
TM9SF4Q92544 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.86■□□□□ 0.29
TM9SF4Q92544 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TM9SF4Q92544 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 POM121L3P-201ENST00000419331 1163 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 IGHV3-47-201ENST00000425060 335 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 AC079781.3-201ENST00000449110 356 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 RN7SL606P-201ENST00000472779 293 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 AC106795.1-205ENST00000512851 1056 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 AP002469.2-201ENST00000531724 424 ntBASIC16.85■□□□□ 0.29
TM9SF4Q92544 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TM9SF4Q92544 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.85■□□□□ 0.29
TM9SF4Q92544 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms