Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.361e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.361e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 01e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-205ENST00000503997 628 ntTSL 312.67□□□□□ -0.381e-6■□□□□ 9.6
DDX55Q8NHQ9 SNRPG-207ENST00000480370 487 ntTSL 213.75□□□□□ -0.214e-12■□□□□ 9.6
DDX55Q8NHQ9 SNRPG-203ENST00000429728 566 ntTSL 211.6□□□□□ -0.554e-12■□□□□ 9.6
DDX55Q8NHQ9 SNRPG-201ENST00000272348 625 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.784e-12■□□□□ 9.6
DDX55Q8NHQ9 SNRPG-209ENST00000488400 393 ntTSL 29.31□□□□□ -0.924e-12■□□□□ 9.6
DDX55Q8NHQ9 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC5.53□□□□□ -1.524e-12■□□□□ 9.6
DDX55Q8NHQ9 CTSZ-204ENST00000503833 955 ntTSL 1 (best)27.33■■□□□ 1.971e-7■□□□□ 9.6
DDX55Q8NHQ9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.948e-7■□□□□ 9.6
DDX55Q8NHQ9 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.032e-6■□□□□ 9.6
DDX55Q8NHQ9 H3F3B-209ENST00000589949 842 ntTSL 222.47■■□□□ 1.193e-35■□□□□ 9.6
DDX55Q8NHQ9 FKBP8-212ENST00000606531 460 ntTSL 218.04■□□□□ 0.482e-40■□□□□ 9.6
DDX55Q8NHQ9 KRT8-213ENST00000550170 2202 ntTSL 518.93■□□□□ 0.627e-7■□□□□ 9.6
DDX55Q8NHQ9 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.89■□□□□ 0.617e-7■□□□□ 9.6
DDX55Q8NHQ9 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.617e-7■□□□□ 9.6
DDX55Q8NHQ9 KRT8-203ENST00000546583 2862 ntTSL 515.69■□□□□ 0.17e-7■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.877e-15■□□□□ 9.6
DDX55Q8NHQ9 CCDC57-219ENST00000584717 513 ntTSL 220.84■□□□□ 0.933e-8■□□□□ 9.6
DDX55Q8NHQ9 LUC7L2-204ENST00000456182 2411 ntTSL 1 (best)20.45■□□□□ 0.868e-11■□□□□ 9.6
DDX55Q8NHQ9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.3■□□□□ 0.688e-11■□□□□ 9.6
DDX55Q8NHQ9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.668e-11■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.657e-15■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-208ENST00000532004 353 ntTSL 318.69■□□□□ 0.587e-15■□□□□ 9.6
DDX55Q8NHQ9 CCDC57-204ENST00000392345 678 ntAPPRIS ALT2 TSL 317.11■□□□□ 0.333e-8■□□□□ 9.6
DDX55Q8NHQ9 CCDC57-218ENST00000583593 429 ntTSL 317■□□□□ 0.313e-8■□□□□ 9.6
DDX55Q8NHQ9 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.292e-6■□□□□ 9.6
DDX55Q8NHQ9 CDIP1-203ENST00000562579 577 ntTSL 516.71■□□□□ 0.273e-8■□□□□ 9.6
DDX55Q8NHQ9 CCDC57-217ENST00000583053 188 ntAPPRIS ALT2 TSL 516.67■□□□□ 0.263e-8■□□□□ 9.6
DDX55Q8NHQ9 CDIP1-213ENST00000589159 838 ntTSL 515.27■□□□□ 0.043e-8■□□□□ 9.6
DDX55Q8NHQ9 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.013e-8■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-206ENST00000530398 313 ntTSL 314.3□□□□□ -0.127e-15■□□□□ 9.6
DDX55Q8NHQ9 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.153e-8■□□□□ 9.6
DDX55Q8NHQ9 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.153e-8■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-203ENST00000525722 489 ntTSL 213.72□□□□□ -0.217e-15■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-204ENST00000526222 350 ntTSL 213.72□□□□□ -0.217e-15■□□□□ 9.6
DDX55Q8NHQ9 RPLP2-205ENST00000527517 646 ntTSL 213.28□□□□□ -0.287e-15■□□□□ 9.6
DDX55Q8NHQ9 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.65□□□□□ -1.183e-8■□□□□ 9.6
DDX55Q8NHQ9 LUC7L2-206ENST00000482860 2599 ntTSL 26.95□□□□□ -1.33e-8■□□□□ 9.6
DDX55Q8NHQ9 LUC7L2-207ENST00000498518 2837 ntTSL 24.13□□□□□ -1.753e-8■□□□□ 9.6
DDX55Q8NHQ9 MIR639-201ENST00000384974 98 ntBASIC31.92■■■□□ 2.74e-9■□□□□ 9.6
DDX55Q8NHQ9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.746e-9■□□□□ 9.6
DDX55Q8NHQ9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.61■□□□□ 0.736e-9■□□□□ 9.6
DDX55Q8NHQ9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.64e-9■□□□□ 9.6
DDX55Q8NHQ9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.456e-9■□□□□ 9.6
DDX55Q8NHQ9 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.334e-9■□□□□ 9.6
DDX55Q8NHQ9 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.284e-9■□□□□ 9.6
DDX55Q8NHQ9 UBXN1-205ENST00000525004 482 ntTSL 316.65■□□□□ 0.264e-9■□□□□ 9.6
DDX55Q8NHQ9 COL18A1-201ENST00000342220 3386 ntTSL 214.4□□□□□ -0.16e-9■□□□□ 9.6
DDX55Q8NHQ9 TECR-218ENST00000599646 2899 nt12.24□□□□□ -0.454e-9■□□□□ 9.6
DDX55Q8NHQ9 AL136295.5-201ENST00000558468 4798 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.474e-9■□□□□ 9.6
DDX55Q8NHQ9 IRF9-208ENST00000560311 648 ntTSL 27.97□□□□□ -1.134e-9■□□□□ 9.6
DDX55Q8NHQ9 DCAF17-205ENST00000468592 2429 ntTSL 25.07□□□□□ -1.64e-9■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-221ENST00000513230 248 ntTSL 326.73■■□□□ 1.872e-11■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-238ENST00000521116 806 ntTSL 425.29■■□□□ 1.642e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-228ENST00000515714 690 ntTSL 423.26■■□□□ 1.312e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-207ENST00000503105 559 ntTSL 321.96■■□□□ 1.112e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-212ENST00000505087 592 ntTSL 321.96■■□□□ 1.112e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-245ENST00000523137 1563 ntTSL 421.81■■□□□ 1.082e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-208ENST00000503664 569 ntTSL 420.36■□□□□ 0.852e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-225ENST00000515158 850 ntTSL 419.82■□□□□ 0.762e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-242ENST00000522256 492 ntTSL 418.84■□□□□ 0.612e-11■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-226ENST00000515446 368 ntTSL 218.53■□□□□ 0.562e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-213ENST00000505811 1155 ntTSL 518.32■□□□□ 0.522e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-220ENST00000513225 805 ntTSL 417.11■□□□□ 0.332e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-209ENST00000504348 594 ntTSL 416.94■□□□□ 0.32e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-215ENST00000508103 610 ntTSL 216.64■□□□□ 0.252e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-211ENST00000504779 792 ntTSL 516.41■□□□□ 0.222e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-214ENST00000506721 602 ntTSL 516.33■□□□□ 0.22e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-224ENST00000514731 1371 ntTSL 216.33■□□□□ 0.22e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-233ENST00000519455 451 ntTSL 416.28■□□□□ 0.22e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-217ENST00000510431 620 ntTSL 216.25■□□□□ 0.192e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-234ENST00000519707 582 ntTSL 216.25■□□□□ 0.192e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-223ENST00000514332 2444 ntTSL 215.53■□□□□ 0.082e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-222ENST00000513972 761 ntTSL 215.5■□□□□ 0.072e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-232ENST00000519056 530 ntTSL 415.28■□□□□ 0.042e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.022e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.032e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.182e-13■□□□□ 9.6
DDX55Q8NHQ9 HNRNPH1-219ENST00000512273 501 ntTSL 410.97□□□□□ -0.652e-13■□□□□ 9.6
DDX55Q8NHQ9 MAGEC2-201ENST00000247452 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.329e-7■□□□□ 9.6
DDX55Q8NHQ9 CALR-204ENST00000586967 394 ntTSL 217.25■□□□□ 0.351e-16■□□□□ 9.5
DDX55Q8NHQ9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.65■□□□□ 0.93e-6■□□□□ 9.5
DDX55Q8NHQ9 MAP4K4-220ENST00000627726 3135 ntTSL 5 BASIC10.42□□□□□ -0.743e-6■□□□□ 9.5
DDX55Q8NHQ9 MAP4K4-209ENST00000421882 3416 ntTSL 59.07□□□□□ -0.963e-6■□□□□ 9.5
DDX55Q8NHQ9 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC8.14□□□□□ -1.113e-6■□□□□ 9.5
DDX55Q8NHQ9 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.78□□□□□ -1.163e-6■□□□□ 9.5
DDX55Q8NHQ9 CYBA-205ENST00000565588 221 ntTSL 213.3□□□□□ -0.285e-18■□□□□ 9.5
DDX55Q8NHQ9 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.832e-12■□□□□ 9.5
DDX55Q8NHQ9 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.842e-12■□□□□ 9.5
DDX55Q8NHQ9 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.46□□□□□ -1.382e-12■□□□□ 9.5
DDX55Q8NHQ9 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.02□□□□□ -1.452e-12■□□□□ 9.5
DDX55Q8NHQ9 NUCB1-209ENST00000465524 839 ntTSL 519.41■□□□□ 0.76e-7■□□□□ 9.5
DDX55Q8NHQ9 UBN2-201ENST00000473989 14444 ntAPPRIS P1 TSL 2 BASIC10□□□□□ -0.811e-11■□□□□ 9.5
DDX55Q8NHQ9 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC21.09■□□□□ 0.973e-6■□□□□ 9.5
DDX55Q8NHQ9 RPS27L-206ENST00000482846 2944 ntTSL 1 (best)15.63■□□□□ 0.093e-6■□□□□ 9.5
DDX55Q8NHQ9 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.173e-6■□□□□ 9.5
DDX55Q8NHQ9 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC8.86□□□□□ -0.993e-6■□□□□ 9.5
DDX55Q8NHQ9 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC5.65□□□□□ -1.53e-6■□□□□ 9.5
Retrieved 100 of 15,504 protein–RNA pairs in 111.4 ms