Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC005104.2-201ENST00000427818 678 ntBASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 AL591684.3-201ENST00000605187 298 ntBASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 MIR7706-201ENST00000613747 67 ntBASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 HMGN1P19-201ENST00000436976 333 ntBASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 MIR5100-201ENST00000579544 119 ntBASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 BNIP3P18-201ENST00000593976 575 ntBASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 LINC00896-202ENST00000609602 2128 ntBASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SH3RF1Q7Z6J0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AC093909.1-201ENST00000504731 1122 ntBASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AC024563.2-201ENST00000603282 481 ntBASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AC055717.3-201ENST00000622967 595 ntBASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AL353692.3-201ENST00000407031 1396 ntBASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 AC006116.8-202ENST00000587620 1550 ntBASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SH3RF1Q7Z6J0 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 POM121L3P-201ENST00000419331 1163 ntBASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 AC018712.1-201ENST00000455767 687 ntBASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SH3RF1Q7Z6J0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SH3RF1Q7Z6J0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.39■□□□□ 0.86
SH3RF1Q7Z6J0 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
SH3RF1Q7Z6J0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms