Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
ZNF549Q6P9A3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 AC092647.4-201ENST00000457211 535 ntBASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 AC022616.7-201ENST00000525383 220 ntBASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 RNF126P1-202ENST00000569893 925 ntBASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 AL353692.3-201ENST00000407031 1396 ntBASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ZNF549Q6P9A3 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 TSPY12P-201ENST00000421279 868 ntBASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 AC005332.3-201ENST00000589904 676 ntBASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 FZD10-202ENST00000539839 3282 ntBASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ZNF549Q6P9A3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 TMPOP1-202ENST00000424642 1267 ntBASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 GPR32P1-201ENST00000601788 811 ntBASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 AL390719.2-201ENST00000606993 987 ntBASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ZNF549Q6P9A3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms