Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.66■□□□□ 0.58
HDAC4P56524 KRT8P26-201ENST00000534154 1276 ntBASIC18.66■□□□□ 0.58
HDAC4P56524 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.66■□□□□ 0.58
HDAC4P56524 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HDAC4P56524 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HDAC4P56524 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.66■□□□□ 0.58
HDAC4P56524 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.66■□□□□ 0.58
HDAC4P56524 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
HDAC4P56524 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.65■□□□□ 0.58
HDAC4P56524 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.65■□□□□ 0.58
HDAC4P56524 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.65■□□□□ 0.58
HDAC4P56524 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.65■□□□□ 0.58
HDAC4P56524 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HDAC4P56524 GNAS-203ENST00000306120 1878 ntBASIC18.65■□□□□ 0.58
HDAC4P56524 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
HDAC4P56524 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
HDAC4P56524 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.64■□□□□ 0.58
HDAC4P56524 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.64■□□□□ 0.58
HDAC4P56524 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HDAC4P56524 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HDAC4P56524 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.64■□□□□ 0.57
HDAC4P56524 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.64■□□□□ 0.57
HDAC4P56524 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.64■□□□□ 0.57
HDAC4P56524 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HDAC4P56524 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 AC009949.1-201ENST00000623048 1830 ntBASIC18.64■□□□□ 0.57
HDAC4P56524 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 IER3-202ENST00000376377 1350 ntBASIC18.64■□□□□ 0.57
HDAC4P56524 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
HDAC4P56524 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.64■□□□□ 0.57
HDAC4P56524 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HDAC4P56524 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HDAC4P56524 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.63■□□□□ 0.57
HDAC4P56524 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
HDAC4P56524 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
HDAC4P56524 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.63■□□□□ 0.57
HDAC4P56524 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 ARMC10P1-201ENST00000313754 855 ntBASIC18.63■□□□□ 0.57
HDAC4P56524 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 AL845331.1-201ENST00000424978 1190 ntBASIC18.63■□□□□ 0.57
HDAC4P56524 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.63■□□□□ 0.57
HDAC4P56524 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.63■□□□□ 0.57
HDAC4P56524 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.63■□□□□ 0.57
HDAC4P56524 AL592071.1-201ENST00000611956 408 ntBASIC18.63■□□□□ 0.57
HDAC4P56524 AL358472.4-201ENST00000633140 710 ntBASIC18.63■□□□□ 0.57
HDAC4P56524 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.63■□□□□ 0.57
HDAC4P56524 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.63■□□□□ 0.57
HDAC4P56524 AC016734.2-201ENST00000624325 1377 ntBASIC18.63■□□□□ 0.57
HDAC4P56524 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HDAC4P56524 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms