Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
VCPP55072 KRT8P7-201ENST00000533003 1432 ntBASIC19.11■□□□□ 0.65
VCPP55072 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.11■□□□□ 0.65
VCPP55072 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
VCPP55072 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.11■□□□□ 0.65
VCPP55072 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
VCPP55072 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.11■□□□□ 0.65
VCPP55072 NUS1P2-201ENST00000417358 873 ntBASIC19.11■□□□□ 0.65
VCPP55072 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 KRT18P67-201ENST00000432816 1264 ntBASIC19.11■□□□□ 0.65
VCPP55072 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.11■□□□□ 0.65
VCPP55072 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.11■□□□□ 0.65
VCPP55072 AC009065.1-201ENST00000564055 1225 ntBASIC19.11■□□□□ 0.65
VCPP55072 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.11■□□□□ 0.65
VCPP55072 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.11■□□□□ 0.65
VCPP55072 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VCPP55072 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VCPP55072 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
VCPP55072 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VCPP55072 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.1■□□□□ 0.65
VCPP55072 RPL13AP23-201ENST00000480739 586 ntBASIC19.1■□□□□ 0.65
VCPP55072 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VCPP55072 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VCPP55072 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.1■□□□□ 0.65
VCPP55072 AC067852.2-201ENST00000590513 2313 ntBASIC19.09■□□□□ 0.65
VCPP55072 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.09■□□□□ 0.65
VCPP55072 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.09■□□□□ 0.65
VCPP55072 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
VCPP55072 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VCPP55072 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.09■□□□□ 0.65
VCPP55072 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.09■□□□□ 0.65
VCPP55072 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
VCPP55072 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.09■□□□□ 0.65
VCPP55072 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.09■□□□□ 0.65
VCPP55072 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.09■□□□□ 0.65
VCPP55072 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VCPP55072 KRT8P50-201ENST00000562022 1438 ntBASIC19.08■□□□□ 0.65
VCPP55072 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
VCPP55072 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCPP55072 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
VCPP55072 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VCPP55072 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCPP55072 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCPP55072 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
VCPP55072 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
VCPP55072 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VCPP55072 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms