Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TSPY5P-201ENST00000426936 936 ntBASIC18.79■□□□□ 0.6
LIG3P49916 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.79■□□□□ 0.6
LIG3P49916 KRT18P35-201ENST00000510488 1269 ntBASIC18.79■□□□□ 0.6
LIG3P49916 WWOX-216ENST00000569818 525 ntBASIC18.79■□□□□ 0.6
LIG3P49916 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.79■□□□□ 0.6
LIG3P49916 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 AL031432.5-201ENST00000641059 760 ntBASIC18.79■□□□□ 0.6
LIG3P49916 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 AC036111.1-201ENST00000533973 1582 ntBASIC18.79■□□□□ 0.6
LIG3P49916 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
LIG3P49916 RCC2P3-201ENST00000418112 1537 ntBASIC18.79■□□□□ 0.6
LIG3P49916 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG3P49916 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG3P49916 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.78■□□□□ 0.6
LIG3P49916 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 AC063952.2-201ENST00000498792 1227 ntBASIC18.78■□□□□ 0.6
LIG3P49916 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.78■□□□□ 0.6
LIG3P49916 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.78■□□□□ 0.6
LIG3P49916 NEK4P2-201ENST00000580004 1012 ntBASIC18.78■□□□□ 0.6
LIG3P49916 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
LIG3P49916 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.78■□□□□ 0.6
LIG3P49916 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIG3P49916 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.78■□□□□ 0.6
LIG3P49916 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG3P49916 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG3P49916 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.77■□□□□ 0.6
LIG3P49916 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG3P49916 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.77■□□□□ 0.6
LIG3P49916 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG3P49916 AL441883.1-201ENST00000566170 1045 ntBASIC18.77■□□□□ 0.6
LIG3P49916 MIR3180-5-201ENST00000583743 153 ntBASIC18.77■□□□□ 0.6
LIG3P49916 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG3P49916 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.77■□□□□ 0.6
LIG3P49916 NTF6B-201ENST00000591913 560 ntBASIC18.77■□□□□ 0.6
LIG3P49916 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIG3P49916 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIG3P49916 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.77■□□□□ 0.59
LIG3P49916 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIG3P49916 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIG3P49916 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.77■□□□□ 0.59
LIG3P49916 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG3P49916 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
LIG3P49916 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.76■□□□□ 0.59
LIG3P49916 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIG3P49916 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG3P49916 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 AC068418.2-201ENST00000577309 3703 ntBASIC18.76■□□□□ 0.59
LIG3P49916 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.76■□□□□ 0.59
LIG3P49916 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 ARMC10P1-201ENST00000313754 855 ntBASIC18.76■□□□□ 0.59
LIG3P49916 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG3P49916 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 AP000523.1-201ENST00000398242 1049 ntBASIC18.76■□□□□ 0.59
LIG3P49916 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.76■□□□□ 0.59
LIG3P49916 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG3P49916 AC022616.7-201ENST00000525383 220 ntBASIC18.76■□□□□ 0.59
LIG3P49916 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIG3P49916 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.76■□□□□ 0.59
LIG3P49916 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms