Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.59■□□□□ 0.89
CTCFP49711 IGHV3-71-201ENST00000523324 359 ntBASIC20.59■□□□□ 0.89
CTCFP49711 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CTCFP49711 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CTCFP49711 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.59■□□□□ 0.89
CTCFP49711 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CTCFP49711 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CTCFP49711 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CTCFP49711 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CTCFP49711 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTCFP49711 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CTCFP49711 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTCFP49711 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTCFP49711 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CTCFP49711 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CTCFP49711 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC20.58■□□□□ 0.89
CTCFP49711 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.58■□□□□ 0.89
CTCFP49711 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 KRT8P50-201ENST00000562022 1438 ntBASIC20.58■□□□□ 0.88
CTCFP49711 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 PMPCAP1-201ENST00000508114 1576 ntBASIC20.58■□□□□ 0.88
CTCFP49711 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CTCFP49711 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
CTCFP49711 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.57■□□□□ 0.88
CTCFP49711 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 RHOQP3-201ENST00000437982 621 ntBASIC20.57■□□□□ 0.88
CTCFP49711 KRT17P7-201ENST00000451704 1104 ntBASIC20.57■□□□□ 0.88
CTCFP49711 RN7SL692P-201ENST00000464677 288 ntBASIC20.57■□□□□ 0.88
CTCFP49711 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.57■□□□□ 0.88
CTCFP49711 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.57■□□□□ 0.88
CTCFP49711 RPS15P9-201ENST00000494093 319 ntBASIC20.57■□□□□ 0.88
CTCFP49711 NOP2-211ENST00000540228 668 ntTSL 2 BASIC20.57■□□□□ 0.88
CTCFP49711 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC20.57■□□□□ 0.88
CTCFP49711 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.57■□□□□ 0.88
CTCFP49711 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC20.57■□□□□ 0.88
CTCFP49711 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CTCFP49711 AC007064.4-201ENST00000637740 555 ntBASIC20.57■□□□□ 0.88
CTCFP49711 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.57■□□□□ 0.88
CTCFP49711 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CTCFP49711 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 AC116562.4-201ENST00000641316 2276 ntBASIC20.56■□□□□ 0.88
CTCFP49711 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
CTCFP49711 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.56■□□□□ 0.88
CTCFP49711 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.56■□□□□ 0.88
CTCFP49711 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CTCFP49711 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 AL627223.1-201ENST00000416693 442 ntBASIC20.56■□□□□ 0.88
CTCFP49711 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.56■□□□□ 0.88
CTCFP49711 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
CTCFP49711 GPR53P-205ENST00000457298 1084 ntBASIC20.56■□□□□ 0.88
CTCFP49711 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.56■□□□□ 0.88
CTCFP49711 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CTCFP49711 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.56■□□□□ 0.88
CTCFP49711 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.56■□□□□ 0.88
CTCFP49711 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CTCFP49711 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CTCFP49711 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.55■□□□□ 0.88
CTCFP49711 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 SIGLEC16-201ENST00000599858 1437 ntBASIC20.55■□□□□ 0.88
CTCFP49711 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.55■□□□□ 0.88
CTCFP49711 AL163051.1-201ENST00000569214 1512 ntBASIC20.55■□□□□ 0.88
CTCFP49711 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.55■□□□□ 0.88
CTCFP49711 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.55■□□□□ 0.88
CTCFP49711 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.55■□□□□ 0.88
CTCFP49711 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.55■□□□□ 0.88
CTCFP49711 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.55■□□□□ 0.88
CTCFP49711 AL662799.1-202ENST00000614205 422 ntBASIC20.55■□□□□ 0.88
CTCFP49711 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.55■□□□□ 0.88
CTCFP49711 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CTCFP49711 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms