Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
HOXA1P49639 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 AC090192.1-201ENST00000517740 490 ntBASIC14.86□□□□□ -0.03
HOXA1P49639 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXA1P49639 AC124016.1-201ENST00000609552 612 ntBASIC14.86□□□□□ -0.03
HOXA1P49639 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.86□□□□□ -0.03
HOXA1P49639 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.86□□□□□ -0.03
HOXA1P49639 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HOXA1P49639 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HOXA1P49639 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.86□□□□□ -0.03
HOXA1P49639 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.85□□□□□ -0.03
HOXA1P49639 MYLKP1-201ENST00000509077 1580 ntBASIC14.85□□□□□ -0.03
HOXA1P49639 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 AL121761.2-201ENST00000598007 1648 ntBASIC14.85□□□□□ -0.03
HOXA1P49639 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
HOXA1P49639 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 FLJ16779-201ENST00000612722 7638 ntBASIC14.85□□□□□ -0.03
HOXA1P49639 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
HOXA1P49639 SERF2-207ENST00000409614 582 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 AC091390.4-202ENST00000476426 537 ntBASIC14.85□□□□□ -0.03
HOXA1P49639 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXA1P49639 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC14.85□□□□□ -0.03
HOXA1P49639 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXA1P49639 HTR7P1-201ENST00000538670 1336 ntBASIC14.85□□□□□ -0.03
HOXA1P49639 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXA1P49639 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 AC008741.2-201ENST00000612792 3115 ntBASIC14.85□□□□□ -0.03
HOXA1P49639 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.85□□□□□ -0.03
HOXA1P49639 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.85□□□□□ -0.03
HOXA1P49639 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HOXA1P49639 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 AC093677.2-201ENST00000600169 1863 ntBASIC14.84□□□□□ -0.03
HOXA1P49639 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXA1P49639 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXA1P49639 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC14.84□□□□□ -0.03
HOXA1P49639 HLA-L-209ENST00000420110 1011 ntBASIC14.84□□□□□ -0.03
HOXA1P49639 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.84□□□□□ -0.03
HOXA1P49639 AC011298.2-201ENST00000617989 482 ntBASIC14.84□□□□□ -0.03
HOXA1P49639 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC14.84□□□□□ -0.03
HOXA1P49639 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HOXA1P49639 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HOXA1P49639 REXO1L9P-201ENST00000604264 2108 ntBASIC14.84□□□□□ -0.03
HOXA1P49639 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.84□□□□□ -0.03
HOXA1P49639 LINC02228-204ENST00000642115 2962 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms