Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.81□□□□□ -0.2
HOXD3P31249 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 AC006538.3-201ENST00000612495 578 ntBASIC13.81□□□□□ -0.2
HOXD3P31249 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXD3P31249 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HOXD3P31249 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC13.81□□□□□ -0.2
HOXD3P31249 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HOXD3P31249 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC13.81□□□□□ -0.2
HOXD3P31249 MADD-208ENST00000405573 1823 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD3P31249 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD3P31249 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.8□□□□□ -0.2
HOXD3P31249 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.8□□□□□ -0.2
HOXD3P31249 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD3P31249 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD3P31249 REXO1L9P-201ENST00000604264 2108 ntBASIC13.8□□□□□ -0.2
HOXD3P31249 REXO1L6P-202ENST00000619970 1078 ntBASIC13.8□□□□□ -0.2
HOXD3P31249 TP73-AS1-207ENST00000624167 988 ntBASIC13.8□□□□□ -0.2
HOXD3P31249 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.8□□□□□ -0.2
HOXD3P31249 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD3P31249 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.8□□□□□ -0.2
HOXD3P31249 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
HOXD3P31249 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HOXD3P31249 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.8□□□□□ -0.2
HOXD3P31249 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.8□□□□□ -0.2
HOXD3P31249 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HOXD3P31249 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXD3P31249 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXD3P31249 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HOXD3P31249 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
HOXD3P31249 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.79□□□□□ -0.2
HOXD3P31249 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC13.79□□□□□ -0.2
HOXD3P31249 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC13.79□□□□□ -0.2
HOXD3P31249 AC096582.2-201ENST00000510860 516 ntBASIC13.79□□□□□ -0.2
HOXD3P31249 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
HOXD3P31249 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.79□□□□□ -0.2
HOXD3P31249 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms