Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17■□□□□ 0.31
COL5A1P20908 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17■□□□□ 0.31
COL5A1P20908 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 COX5BP2-201ENST00000392354 334 ntBASIC16.99■□□□□ 0.31
COL5A1P20908 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.99■□□□□ 0.31
COL5A1P20908 ADH5P3-201ENST00000433842 1137 ntBASIC16.99■□□□□ 0.31
COL5A1P20908 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.99■□□□□ 0.31
COL5A1P20908 AC011467.4-201ENST00000594891 528 ntBASIC16.99■□□□□ 0.31
COL5A1P20908 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.99■□□□□ 0.31
COL5A1P20908 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A1P20908 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL5A1P20908 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
COL5A1P20908 AL049757.1-201ENST00000616842 1596 ntBASIC16.99■□□□□ 0.31
COL5A1P20908 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A1P20908 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL5A1P20908 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.99■□□□□ 0.31
COL5A1P20908 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A1P20908 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
COL5A1P20908 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.98■□□□□ 0.31
COL5A1P20908 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.98■□□□□ 0.31
COL5A1P20908 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.98■□□□□ 0.31
COL5A1P20908 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.98■□□□□ 0.31
COL5A1P20908 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
COL5A1P20908 KRT19P2-202ENST00000557173 1012 ntBASIC16.98■□□□□ 0.31
COL5A1P20908 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.98■□□□□ 0.31
COL5A1P20908 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.98■□□□□ 0.31
COL5A1P20908 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.98■□□□□ 0.31
COL5A1P20908 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
COL5A1P20908 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.98■□□□□ 0.31
COL5A1P20908 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 AP002414.1-201ENST00000391405 1147 ntBASIC16.98■□□□□ 0.31
COL5A1P20908 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 DUTP2-201ENST00000519164 463 ntBASIC16.98■□□□□ 0.31
COL5A1P20908 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.98■□□□□ 0.31
COL5A1P20908 GGTLC5P-201ENST00000617623 998 ntBASIC16.98■□□□□ 0.31
COL5A1P20908 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
COL5A1P20908 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.98■□□□□ 0.31
COL5A1P20908 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A1P20908 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.97■□□□□ 0.31
COL5A1P20908 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.97■□□□□ 0.31
COL5A1P20908 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.97■□□□□ 0.31
COL5A1P20908 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL5A1P20908 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
COL5A1P20908 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.97■□□□□ 0.31
COL5A1P20908 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.97■□□□□ 0.31
COL5A1P20908 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.97■□□□□ 0.31
COL5A1P20908 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.97■□□□□ 0.31
COL5A1P20908 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.97■□□□□ 0.31
COL5A1P20908 AC004790.2-201ENST00000623588 572 ntBASIC16.97■□□□□ 0.31
COL5A1P20908 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.97■□□□□ 0.31
COL5A1P20908 AC087289.5-201ENST00000586076 3175 ntBASIC16.97■□□□□ 0.31
COL5A1P20908 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
COL5A1P20908 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL5A1P20908 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
COL5A1P20908 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL5A1P20908 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms