Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 LAGE3P1-201ENST00000425356 484 ntBASIC20.98■□□□□ 0.95
HLA-DOAP06340 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 AC092910.1-201ENST00000482027 1129 ntBASIC20.98■□□□□ 0.95
HLA-DOAP06340 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 AC073592.4-201ENST00000623827 446 ntBASIC20.98■□□□□ 0.95
HLA-DOAP06340 AC073592.5-201ENST00000624854 528 ntBASIC20.98■□□□□ 0.95
HLA-DOAP06340 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.98■□□□□ 0.95
HLA-DOAP06340 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HLA-DOAP06340 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 AC117500.6-201ENST00000624871 588 ntBASIC20.97■□□□□ 0.95
HLA-DOAP06340 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
HLA-DOAP06340 SIRPAP1-201ENST00000448467 1770 ntBASIC20.97■□□□□ 0.95
HLA-DOAP06340 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HLA-DOAP06340 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DOAP06340 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DOAP06340 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DOAP06340 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DOAP06340 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DOAP06340 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 SPDYE21P-201ENST00000413323 827 ntBASIC20.96■□□□□ 0.95
HLA-DOAP06340 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 AC105339.3-201ENST00000560043 636 ntBASIC20.96■□□□□ 0.95
HLA-DOAP06340 AC012640.2-201ENST00000561606 901 ntBASIC20.96■□□□□ 0.95
HLA-DOAP06340 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DOAP06340 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HLA-DOAP06340 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
HLA-DOAP06340 SIGLEC16-201ENST00000599858 1437 ntBASIC20.95■□□□□ 0.95
HLA-DOAP06340 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 AC098831.1-202ENST00000438821 336 ntBASIC20.95■□□□□ 0.94
HLA-DOAP06340 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 IGHV3-22-201ENST00000520721 359 ntBASIC20.95■□□□□ 0.94
HLA-DOAP06340 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DOAP06340 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
HLA-DOAP06340 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms