Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 AC083906.2-201ENST00000511578 360 ntBASIC13.46□□□□□ -0.25
HLA-DQA1P01909 TK2-208ENST00000545043 1120 ntTSL 2 BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 AL121906.2-201ENST00000621597 723 ntBASIC13.46□□□□□ -0.25
HLA-DQA1P01909 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HLA-DQA1P01909 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.26
HLA-DQA1P01909 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 HTR7P1-201ENST00000538670 1336 ntBASIC13.45□□□□□ -0.26
HLA-DQA1P01909 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 METTL15-202ENST00000403099 795 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 OAS3-207ENST00000551007 998 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 PFKL-212ENST00000628044 129 ntTSL 3 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
HLA-DQA1P01909 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
HLA-DQA1P01909 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms