Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL031598.1-201ENST00000561511 1773 ntBASIC17.42■□□□□ 0.38
SDC3O75056 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.42■□□□□ 0.38
SDC3O75056 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.42■□□□□ 0.38
SDC3O75056 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SDC3O75056 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.41■□□□□ 0.38
SDC3O75056 PHGDH-209ENST00000641074 1780 ntBASIC17.41■□□□□ 0.38
SDC3O75056 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
SDC3O75056 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC3O75056 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.41■□□□□ 0.38
SDC3O75056 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
SDC3O75056 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC3O75056 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SDC3O75056 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SDC3O75056 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC3O75056 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC3O75056 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.41■□□□□ 0.38
SDC3O75056 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.4■□□□□ 0.38
SDC3O75056 KRT8P47-201ENST00000604727 1398 ntBASIC17.4■□□□□ 0.38
SDC3O75056 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.4■□□□□ 0.38
SDC3O75056 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.4■□□□□ 0.38
SDC3O75056 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SDC3O75056 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.4■□□□□ 0.38
SDC3O75056 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.4■□□□□ 0.38
SDC3O75056 AC007967.2-201ENST00000432613 625 ntBASIC17.4■□□□□ 0.38
SDC3O75056 KRT18P3-201ENST00000451602 1288 ntBASIC17.4■□□□□ 0.38
SDC3O75056 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.4■□□□□ 0.38
SDC3O75056 UNC93B6-202ENST00000528242 690 ntBASIC17.4■□□□□ 0.38
SDC3O75056 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.4■□□□□ 0.38
SDC3O75056 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SDC3O75056 FAM197Y3-203ENST00000618346 717 ntBASIC17.4■□□□□ 0.38
SDC3O75056 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.4■□□□□ 0.38
SDC3O75056 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.4■□□□□ 0.38
SDC3O75056 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SDC3O75056 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SDC3O75056 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.4■□□□□ 0.38
SDC3O75056 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SDC3O75056 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SDC3O75056 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
SDC3O75056 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SDC3O75056 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SDC3O75056 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
SDC3O75056 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.39■□□□□ 0.37
SDC3O75056 AC010327.4-202ENST00000591484 748 ntBASIC17.39■□□□□ 0.37
SDC3O75056 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.39■□□□□ 0.37
SDC3O75056 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.39■□□□□ 0.37
SDC3O75056 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.39■□□□□ 0.37
SDC3O75056 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SDC3O75056 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms