Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM13O60858 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM13O60858 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM13O60858 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.6■□□□□ 0.41
TRIM13O60858 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM13O60858 C2orf69P3-201ENST00000565542 1120 ntBASIC17.6■□□□□ 0.41
TRIM13O60858 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 Z99916.2-201ENST00000604037 246 ntBASIC17.6■□□□□ 0.41
TRIM13O60858 LINC01451-201ENST00000623792 534 ntBASIC17.6■□□□□ 0.41
TRIM13O60858 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.6■□□□□ 0.41
TRIM13O60858 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TRIM13O60858 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM13O60858 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.6■□□□□ 0.41
TRIM13O60858 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.6■□□□□ 0.41
TRIM13O60858 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRIM13O60858 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
TRIM13O60858 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 AC011676.5-201ENST00000624864 2660 ntBASIC17.59■□□□□ 0.41
TRIM13O60858 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 AC124067.4-201ENST00000519691 2379 ntBASIC17.59■□□□□ 0.41
TRIM13O60858 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM13O60858 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
TRIM13O60858 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM13O60858 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM13O60858 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM13O60858 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.59■□□□□ 0.41
TRIM13O60858 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 AP000525.1-201ENST00000608286 694 ntBASIC17.59■□□□□ 0.41
TRIM13O60858 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM13O60858 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.59■□□□□ 0.41
TRIM13O60858 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRIM13O60858 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.59■□□□□ 0.41
TRIM13O60858 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.58■□□□□ 0.41
TRIM13O60858 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.41
TRIM13O60858 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.58■□□□□ 0.41
TRIM13O60858 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TRIM13O60858 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.58■□□□□ 0.41
TRIM13O60858 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM13O60858 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.58■□□□□ 0.41
TRIM13O60858 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM13O60858 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRIM13O60858 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM13O60858 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TRIM13O60858 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.58■□□□□ 0.4
TRIM13O60858 AL390955.1-201ENST00000428694 934 ntBASIC17.58■□□□□ 0.4
TRIM13O60858 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
TRIM13O60858 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.58■□□□□ 0.4
TRIM13O60858 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.58■□□□□ 0.4
TRIM13O60858 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRIM13O60858 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
TRIM13O60858 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM13O60858 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRIM13O60858 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM13O60858 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.57■□□□□ 0.4
TRIM13O60858 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.57■□□□□ 0.4
TRIM13O60858 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
TRIM13O60858 AC024243.1-201ENST00000609234 778 ntBASIC17.57■□□□□ 0.4
TRIM13O60858 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms