Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPIPA2E9PIF3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPIPA2E9PIF3 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NPIPA2E9PIF3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NPIPA2E9PIF3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.28■□□□□ 0.2
NPIPA2E9PIF3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.28■□□□□ 0.2
NPIPA2E9PIF3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 AC135776.1-201ENST00000319817 2481 ntBASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 AC068472.1-201ENST00000474589 881 ntBASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 AL591684.3-201ENST00000605187 298 ntBASIC16.27■□□□□ 0.2
NPIPA2E9PIF3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 LINC01126-201ENST00000623515 1646 ntBASIC16.27■□□□□ 0.19
NPIPA2E9PIF3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 SAPCD2P3-201ENST00000455031 850 ntBASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AC079776.4-201ENST00000511039 504 ntBASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AP002469.2-201ENST00000531724 424 ntBASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 BNIP3P18-201ENST00000593976 575 ntBASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 BICD1-207ENST00000551848 1962 ntBASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPIPA2E9PIF3 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 AKR1C7P-201ENST00000305623 895 ntBASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 MIR5100-201ENST00000579544 119 ntBASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 REXO1L6P-202ENST00000619970 1078 ntBASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.25■□□□□ 0.19
NPIPA2E9PIF3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms