Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM49D1C9J1S8 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 AC024243.1-201ENST00000609234 778 ntBASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM49D1C9J1S8 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 AC010653.2-201ENST00000623505 997 ntBASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 AL121761.2-201ENST00000598007 1648 ntBASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM49D1C9J1S8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM49D1C9J1S8 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM49D1C9J1S8 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 AC009949.1-201ENST00000623048 1830 ntBASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 MIR1238-201ENST00000408483 83 ntBASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 C2orf69P3-201ENST00000565542 1120 ntBASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM49D1C9J1S8 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms