Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 AC010240.3-201ENST00000607688 395 ntBASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDHGA4Q9Y5G9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 IFNL4P1-201ENST00000607083 540 ntBASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHGA4Q9Y5G9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 AL163051.1-201ENST00000569214 1512 ntBASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 NUS1P1-201ENST00000446295 882 ntBASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 HNRNPA1P23-201ENST00000491091 1133 ntBASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 MIR3917-201ENST00000580971 93 ntBASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHGA4Q9Y5G9 AC073592.3-201ENST00000625118 1834 ntBASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms