Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HIPK3Q9H422 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.45■□□□□ 0.7
HIPK3Q9H422 ELL2P1-201ENST00000413990 1906 ntBASIC19.45■□□□□ 0.7
HIPK3Q9H422 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 GPR89P-201ENST00000407924 1495 ntBASIC19.44■□□□□ 0.7
HIPK3Q9H422 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 PRSS29P-201ENST00000440800 595 ntBASIC19.44■□□□□ 0.7
HIPK3Q9H422 CEND1P1-201ENST00000451006 455 ntBASIC19.44■□□□□ 0.7
HIPK3Q9H422 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
HIPK3Q9H422 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HIPK3Q9H422 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
HIPK3Q9H422 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HIPK3Q9H422 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HIPK3Q9H422 RPS15P9-201ENST00000494093 319 ntBASIC19.43■□□□□ 0.7
HIPK3Q9H422 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.43■□□□□ 0.7
HIPK3Q9H422 IGHV3-65-201ENST00000523210 341 ntBASIC19.43■□□□□ 0.7
HIPK3Q9H422 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.43■□□□□ 0.7
HIPK3Q9H422 AC092364.2-202ENST00000597012 1073 ntBASIC19.43■□□□□ 0.7
HIPK3Q9H422 AC008667.4-201ENST00000607370 168 ntBASIC19.43■□□□□ 0.7
HIPK3Q9H422 AC106028.4-201ENST00000614509 607 ntBASIC19.43■□□□□ 0.7
HIPK3Q9H422 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HIPK3Q9H422 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HIPK3Q9H422 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.42■□□□□ 0.7
HIPK3Q9H422 NCF1C-201ENST00000438382 1427 ntBASIC19.42■□□□□ 0.7
HIPK3Q9H422 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
HIPK3Q9H422 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HIPK3Q9H422 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HIPK3Q9H422 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HIPK3Q9H422 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HIPK3Q9H422 COX5BP2-201ENST00000392354 334 ntBASIC19.42■□□□□ 0.7
HIPK3Q9H422 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.42■□□□□ 0.7
HIPK3Q9H422 FAM8A3P-201ENST00000427218 844 ntBASIC19.42■□□□□ 0.7
HIPK3Q9H422 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.42■□□□□ 0.7
HIPK3Q9H422 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.42■□□□□ 0.7
HIPK3Q9H422 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms