Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.44■□□□□ 0.86
USP28Q96RU2 TERF1P1-201ENST00000311003 1181 ntBASIC20.44■□□□□ 0.86
USP28Q96RU2 ATP5G1P1-201ENST00000448724 379 ntBASIC20.44■□□□□ 0.86
USP28Q96RU2 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
USP28Q96RU2 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 AC097493.4-201ENST00000641197 219 ntBASIC20.44■□□□□ 0.86
USP28Q96RU2 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
USP28Q96RU2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.44■□□□□ 0.86
USP28Q96RU2 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC20.44■□□□□ 0.86
USP28Q96RU2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP28Q96RU2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
USP28Q96RU2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.43■□□□□ 0.86
USP28Q96RU2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USP28Q96RU2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
USP28Q96RU2 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
USP28Q96RU2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
USP28Q96RU2 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.43■□□□□ 0.86
USP28Q96RU2 STARP1-201ENST00000397973 869 ntBASIC20.43■□□□□ 0.86
USP28Q96RU2 AC113347.1-201ENST00000413321 391 ntBASIC20.43■□□□□ 0.86
USP28Q96RU2 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.43■□□□□ 0.86
USP28Q96RU2 YBX1P2-201ENST00000489612 999 ntBASIC20.43■□□□□ 0.86
USP28Q96RU2 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.43■□□□□ 0.86
USP28Q96RU2 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.43■□□□□ 0.86
USP28Q96RU2 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.43■□□□□ 0.86
USP28Q96RU2 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.43■□□□□ 0.86
USP28Q96RU2 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP28Q96RU2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.43■□□□□ 0.86
USP28Q96RU2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
USP28Q96RU2 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.43■□□□□ 0.86
USP28Q96RU2 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 PRORSD1P-202ENST00000563365 2154 ntBASIC20.42■□□□□ 0.86
USP28Q96RU2 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.42■□□□□ 0.86
USP28Q96RU2 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
USP28Q96RU2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.42■□□□□ 0.86
USP28Q96RU2 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 AC022211.2-201ENST00000585075 2527 ntBASIC20.42■□□□□ 0.86
USP28Q96RU2 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.42■□□□□ 0.86
USP28Q96RU2 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.42■□□□□ 0.86
USP28Q96RU2 AC117947.1-201ENST00000427448 529 ntBASIC20.42■□□□□ 0.86
USP28Q96RU2 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 AL031432.5-201ENST00000641059 760 ntBASIC20.42■□□□□ 0.86
USP28Q96RU2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
USP28Q96RU2 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
USP28Q96RU2 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.42■□□□□ 0.86
USP28Q96RU2 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP28Q96RU2 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.42■□□□□ 0.86
USP28Q96RU2 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.42■□□□□ 0.86
USP28Q96RU2 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
USP28Q96RU2 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 KRT18P48-201ENST00000434763 852 ntBASIC20.41■□□□□ 0.86
USP28Q96RU2 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.41■□□□□ 0.86
USP28Q96RU2 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
USP28Q96RU2 AC116407.2-201ENST00000613639 860 ntBASIC20.41■□□□□ 0.86
USP28Q96RU2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
USP28Q96RU2 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.41■□□□□ 0.86
USP28Q96RU2 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
USP28Q96RU2 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms