Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS35Q96QK1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 AP000997.3-201ENST00000623333 2250 ntBASIC17.75■□□□□ 0.43
VPS35Q96QK1 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 AP005901.3-202ENST00000581653 237 ntBASIC17.75■□□□□ 0.43
VPS35Q96QK1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 KRT18P55-202ENST00000578578 1546 ntBASIC17.75■□□□□ 0.43
VPS35Q96QK1 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 KRT8P47-201ENST00000604727 1398 ntBASIC17.75■□□□□ 0.43
VPS35Q96QK1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS35Q96QK1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS35Q96QK1 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 AL390961.4-201ENST00000623958 2535 ntBASIC17.74■□□□□ 0.43
VPS35Q96QK1 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 KRT17P6-201ENST00000453795 1220 ntBASIC17.74■□□□□ 0.43
VPS35Q96QK1 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 AC005336.2-201ENST00000593183 939 ntBASIC17.74■□□□□ 0.43
VPS35Q96QK1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VPS35Q96QK1 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VPS35Q96QK1 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 IGHV3-47-201ENST00000425060 335 ntBASIC17.73■□□□□ 0.43
VPS35Q96QK1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 AC091607.1-201ENST00000490318 1060 ntBASIC17.73■□□□□ 0.43
VPS35Q96QK1 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 AP000867.3-201ENST00000524675 377 ntBASIC17.73■□□□□ 0.43
VPS35Q96QK1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VPS35Q96QK1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
VPS35Q96QK1 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms