Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.29■□□□□ 0.84
ERCC4Q92889 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ERCC4Q92889 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ERCC4Q92889 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ERCC4Q92889 TSPY14P-201ENST00000303979 915 ntBASIC20.29■□□□□ 0.84
ERCC4Q92889 MIR718-201ENST00000390190 70 ntBASIC20.29■□□□□ 0.84
ERCC4Q92889 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.29■□□□□ 0.84
ERCC4Q92889 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
ERCC4Q92889 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.29■□□□□ 0.84
ERCC4Q92889 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.29■□□□□ 0.84
ERCC4Q92889 C2orf69P3-201ENST00000565542 1120 ntBASIC20.29■□□□□ 0.84
ERCC4Q92889 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
ERCC4Q92889 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.29■□□□□ 0.84
ERCC4Q92889 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.29■□□□□ 0.84
ERCC4Q92889 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ERCC4Q92889 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.29■□□□□ 0.84
ERCC4Q92889 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.28■□□□□ 0.84
ERCC4Q92889 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.28■□□□□ 0.84
ERCC4Q92889 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.28■□□□□ 0.84
ERCC4Q92889 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
ERCC4Q92889 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
ERCC4Q92889 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.28■□□□□ 0.84
ERCC4Q92889 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
ERCC4Q92889 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ERCC4Q92889 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.27■□□□□ 0.84
ERCC4Q92889 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ERCC4Q92889 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
ERCC4Q92889 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.27■□□□□ 0.84
ERCC4Q92889 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 SIRPAP1-201ENST00000448467 1770 ntBASIC20.27■□□□□ 0.84
ERCC4Q92889 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ERCC4Q92889 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.27■□□□□ 0.84
ERCC4Q92889 ECEL1P2-202ENST00000465689 757 ntBASIC20.27■□□□□ 0.84
ERCC4Q92889 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.27■□□□□ 0.84
ERCC4Q92889 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.27■□□□□ 0.84
ERCC4Q92889 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ERCC4Q92889 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ERCC4Q92889 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ERCC4Q92889 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
ERCC4Q92889 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ERCC4Q92889 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ERCC4Q92889 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.83
ERCC4Q92889 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
ERCC4Q92889 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.26■□□□□ 0.83
ERCC4Q92889 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
ERCC4Q92889 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ERCC4Q92889 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
ERCC4Q92889 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.26■□□□□ 0.83
ERCC4Q92889 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.26■□□□□ 0.83
ERCC4Q92889 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ERCC4Q92889 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms