Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHROOM3Q8TF72 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 VENTXP7-201ENST00000475503 772 ntBASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHROOM3Q8TF72 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 DRAXINP1-201ENST00000437611 948 ntBASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 TOB2P1-201ENST00000469761 992 ntBASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 AP005901.3-202ENST00000581653 237 ntBASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.21■□□□□ 0.5
SHROOM3Q8TF72 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SHROOM3Q8TF72 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 ATP5G2P1-201ENST00000433580 426 ntBASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.19■□□□□ 0.5
SHROOM3Q8TF72 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 DUTP2-201ENST00000519164 463 ntBASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms