Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC012317.2-201ENST00000623305 2251 ntBASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NKX2-3Q8TAU0 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 AC010460.3-201ENST00000511359 1579 ntBASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 KRT18P67-201ENST00000432816 1264 ntBASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 VENTXP7-201ENST00000475503 772 ntBASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 AC008687.5-201ENST00000593746 558 ntBASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 TP73-AS1-207ENST00000624167 988 ntBASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 AC125634.1-201ENST00000438758 1403 ntBASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NKX2-3Q8TAU0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AC068880.1-201ENST00000507289 2297 ntBASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 FLJ13224-201ENST00000313737 1514 ntBASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AL355385.1-201ENST00000606123 409 ntBASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 AC009949.1-201ENST00000623048 1830 ntBASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-3Q8TAU0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NKX2-3Q8TAU0 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-3Q8TAU0 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms