Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 AC104692.2-201ENST00000603054 253 ntBASIC16.6■□□□□ 0.25
BEST3Q8N1M1 AC114341.1-201ENST00000618070 349 ntBASIC16.6■□□□□ 0.25
BEST3Q8N1M1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BEST3Q8N1M1 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 ESPNP-201ENST00000270691 2015 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 SAPCD2P3-201ENST00000455031 850 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 AL121912.1-201ENST00000603683 238 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 AL591684.3-201ENST00000605187 298 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 REXO1L6P-202ENST00000619970 1078 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 OR6D1P-202ENST00000641007 5290 ntBASIC16.59■□□□□ 0.25
BEST3Q8N1M1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BEST3Q8N1M1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
BEST3Q8N1M1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 MIR5100-201ENST00000579544 119 ntBASIC16.58■□□□□ 0.24
BEST3Q8N1M1 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
BEST3Q8N1M1 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 AL390961.4-201ENST00000623958 2535 ntBASIC16.57■□□□□ 0.24
BEST3Q8N1M1 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
BEST3Q8N1M1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms