Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SH3RF1Q7Z6J0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 MINOS1P3-201ENST00000457048 203 ntBASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SH3RF1Q7Z6J0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
SH3RF1Q7Z6J0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 AF186996.4-201ENST00000467186 377 ntBASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 RPL13AP23-201ENST00000480739 586 ntBASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SH3RF1Q7Z6J0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 VENTXP7-201ENST00000475503 772 ntBASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SH3RF1Q7Z6J0 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 GNAS-203ENST00000306120 1878 ntBASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SH3RF1Q7Z6J0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms