Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 HEIH-201ENST00000623091 1652 ntBASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 NUS1P2-201ENST00000417358 873 ntBASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC144BQ3MJ40 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC144BQ3MJ40 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 AC009053.2-201ENST00000563701 2365 ntBASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 SAPCD2P3-201ENST00000455031 850 ntBASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 AC011840.4-201ENST00000578471 627 ntBASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 REXO1L6P-202ENST00000619970 1078 ntBASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 HLA-A-201ENST00000376802 1334 ntBASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC144BQ3MJ40 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 MINOS1P3-201ENST00000457048 203 ntBASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.72■□□□□ 0.91
CCDC144BQ3MJ40 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms