Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC145285.3-201ENST00000564603 959 ntBASIC18.97■□□□□ 0.63
USP41Q3LFD5 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.97■□□□□ 0.63
USP41Q3LFD5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP41Q3LFD5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 MIR940-201ENST00000401276 94 ntBASIC18.96■□□□□ 0.63
USP41Q3LFD5 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC092910.1-201ENST00000482027 1129 ntBASIC18.96■□□□□ 0.63
USP41Q3LFD5 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC012640.2-201ENST00000561606 901 ntBASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC008735.5-201ENST00000623544 497 ntBASIC18.96■□□□□ 0.63
USP41Q3LFD5 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 AC010460.3-201ENST00000511359 1579 ntBASIC18.96■□□□□ 0.63
USP41Q3LFD5 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.96■□□□□ 0.63
USP41Q3LFD5 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP41Q3LFD5 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 PMPCAP1-201ENST00000508114 1576 ntBASIC18.95■□□□□ 0.62
USP41Q3LFD5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 AC107918.4-202ENST00000641623 219 ntBASIC18.95■□□□□ 0.62
USP41Q3LFD5 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
USP41Q3LFD5 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USP41Q3LFD5 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 KRT8P47-201ENST00000604727 1398 ntBASIC18.94■□□□□ 0.62
USP41Q3LFD5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 AC104109.2-201ENST00000602919 1418 ntBASIC18.94■□□□□ 0.62
USP41Q3LFD5 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 AC079776.2-201ENST00000641154 1609 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms