Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
YBX1P67809 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.43■□□□□ 0.38
YBX1P67809 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
YBX1P67809 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.43■□□□□ 0.38
YBX1P67809 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.43■□□□□ 0.38
YBX1P67809 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.43■□□□□ 0.38
YBX1P67809 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.43■□□□□ 0.38
YBX1P67809 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
YBX1P67809 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.43■□□□□ 0.38
YBX1P67809 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.43■□□□□ 0.38
YBX1P67809 AC113404.2-201ENST00000507884 177 ntBASIC17.43■□□□□ 0.38
YBX1P67809 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.43■□□□□ 0.38
YBX1P67809 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.43■□□□□ 0.38
YBX1P67809 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.43■□□□□ 0.38
YBX1P67809 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.43■□□□□ 0.38
YBX1P67809 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.43■□□□□ 0.38
YBX1P67809 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.43■□□□□ 0.38
YBX1P67809 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 AC006116.8-202ENST00000587620 1550 ntBASIC17.43■□□□□ 0.38
YBX1P67809 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.43■□□□□ 0.38
YBX1P67809 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.43■□□□□ 0.38
YBX1P67809 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 AC022211.2-201ENST00000585075 2527 ntBASIC17.43■□□□□ 0.38
YBX1P67809 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
YBX1P67809 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.42■□□□□ 0.38
YBX1P67809 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.42■□□□□ 0.38
YBX1P67809 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
YBX1P67809 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
YBX1P67809 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
YBX1P67809 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
YBX1P67809 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.42■□□□□ 0.38
YBX1P67809 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.42■□□□□ 0.38
YBX1P67809 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
YBX1P67809 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
YBX1P67809 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.41■□□□□ 0.38
YBX1P67809 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.41■□□□□ 0.38
YBX1P67809 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
YBX1P67809 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.41■□□□□ 0.38
YBX1P67809 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.41■□□□□ 0.38
YBX1P67809 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
YBX1P67809 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.41■□□□□ 0.38
YBX1P67809 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
YBX1P67809 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms