Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.46□□□□□ -0.26
FOXA3P55318 DOC2GP-204ENST00000639052 2548 ntBASIC13.46□□□□□ -0.26
FOXA3P55318 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA3P55318 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.26
FOXA3P55318 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA3P55318 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA3P55318 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA3P55318 PCDHA14-201ENST00000506751 2298 ntBASIC13.46□□□□□ -0.26
FOXA3P55318 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA3P55318 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
FOXA3P55318 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
FOXA3P55318 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
FOXA3P55318 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
FOXA3P55318 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA3P55318 GATS-209ENST00000454084 1030 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA3P55318 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA3P55318 OR2A1-AS1-207ENST00000486094 819 ntBASIC13.45□□□□□ -0.26
FOXA3P55318 F2R-202ENST00000505600 442 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA3P55318 PNMA6B-201ENST00000538162 1200 ntBASIC13.45□□□□□ -0.26
FOXA3P55318 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA3P55318 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 VPS53-216ENST00000574029 585 ntTSL 4 BASIC13.45□□□□□ -0.26
FOXA3P55318 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 AC004264.1-201ENST00000608354 794 ntBASIC13.45□□□□□ -0.26
FOXA3P55318 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.45□□□□□ -0.26
FOXA3P55318 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA3P55318 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA3P55318 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA3P55318 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
FOXA3P55318 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 LINC02199-201ENST00000506655 2702 ntBASIC13.44□□□□□ -0.26
FOXA3P55318 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA3P55318 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA3P55318 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 BET1L-207ENST00000529614 560 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA3P55318 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 AC060766.5-201ENST00000590539 871 ntBASIC13.44□□□□□ -0.26
FOXA3P55318 AC008687.6-201ENST00000596318 630 ntBASIC13.44□□□□□ -0.26
FOXA3P55318 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA3P55318 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA3P55318 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
FOXA3P55318 AC105020.1-201ENST00000435356 2205 ntBASIC13.44□□□□□ -0.26
FOXA3P55318 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA3P55318 SDHAP2-201ENST00000455183 2001 ntBASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms