Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLK1P49759 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLK1P49759 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.84■□□□□ 0.29
CLK1P49759 AC138028.4-201ENST00000564984 1845 ntBASIC16.84■□□□□ 0.29
CLK1P49759 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CLK1P49759 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.84■□□□□ 0.29
CLK1P49759 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLK1P49759 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLK1P49759 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.84■□□□□ 0.29
CLK1P49759 AD000864.1-201ENST00000624076 2295 ntBASIC16.84■□□□□ 0.29
CLK1P49759 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CLK1P49759 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLK1P49759 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLK1P49759 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.29
CLK1P49759 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLK1P49759 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CLK1P49759 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLK1P49759 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLK1P49759 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.83■□□□□ 0.28
CLK1P49759 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.83■□□□□ 0.28
CLK1P49759 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
CLK1P49759 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.83■□□□□ 0.28
CLK1P49759 AC008556.1-201ENST00000610908 2040 ntBASIC16.83■□□□□ 0.28
CLK1P49759 AL357033.4-201ENST00000617703 1807 ntBASIC16.83■□□□□ 0.28
CLK1P49759 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
CLK1P49759 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLK1P49759 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.83■□□□□ 0.28
CLK1P49759 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CLK1P49759 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CLK1P49759 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.82■□□□□ 0.28
CLK1P49759 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CLK1P49759 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
CLK1P49759 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.82■□□□□ 0.28
CLK1P49759 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 AC034236.2-201ENST00000606662 1610 ntBASIC16.82■□□□□ 0.28
CLK1P49759 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
CLK1P49759 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 AP000593.1-201ENST00000393668 712 ntBASIC16.82■□□□□ 0.28
CLK1P49759 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CLK1P49759 MIR4674-201ENST00000582457 87 ntBASIC16.82■□□□□ 0.28
CLK1P49759 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CLK1P49759 AC097493.4-201ENST00000641197 219 ntBASIC16.82■□□□□ 0.28
CLK1P49759 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
CLK1P49759 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLK1P49759 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CLK1P49759 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CLK1P49759 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.81■□□□□ 0.28
CLK1P49759 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLK1P49759 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
CLK1P49759 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.81■□□□□ 0.28
CLK1P49759 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.81■□□□□ 0.28
CLK1P49759 FAM87A-204ENST00000613235 858 ntBASIC16.81■□□□□ 0.28
CLK1P49759 CR769767.2-201ENST00000622735 460 ntBASIC16.81■□□□□ 0.28
CLK1P49759 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
CLK1P49759 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLK1P49759 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms