Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
SOX2P48431 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.76■□□□□ 0.11
SOX2P48431 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.76■□□□□ 0.11
SOX2P48431 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 CR769767.2-201ENST00000622735 460 ntBASIC15.76■□□□□ 0.11
SOX2P48431 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SOX2P48431 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.76■□□□□ 0.11
SOX2P48431 KRT8P7-201ENST00000533003 1432 ntBASIC15.76■□□□□ 0.11
SOX2P48431 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SOX2P48431 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX2P48431 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SOX2P48431 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX2P48431 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC15.75■□□□□ 0.11
SOX2P48431 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX2P48431 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 AC009065.1-201ENST00000564055 1225 ntBASIC15.75■□□□□ 0.11
SOX2P48431 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX2P48431 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX2P48431 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX2P48431 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SOX2P48431 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX2P48431 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.74■□□□□ 0.11
SOX2P48431 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX2P48431 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SOX2P48431 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 LINC00602-201ENST00000629776 2065 ntBASIC15.74■□□□□ 0.11
SOX2P48431 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX2P48431 AP003041.3-201ENST00000527151 707 ntBASIC15.74■□□□□ 0.11
SOX2P48431 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.74■□□□□ 0.11
SOX2P48431 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.74■□□□□ 0.11
SOX2P48431 REXO1L10P-201ENST00000615707 1290 ntBASIC15.74■□□□□ 0.11
SOX2P48431 REXO1L12P-201ENST00000622156 912 ntBASIC15.74■□□□□ 0.11
SOX2P48431 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX2P48431 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
SOX2P48431 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX2P48431 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms