Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.1■□□□□ 0.33
MSX2P35548 AC124016.1-201ENST00000609552 612 ntBASIC17.1■□□□□ 0.33
MSX2P35548 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
MSX2P35548 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 FLJ38576-201ENST00000623820 2459 ntBASIC17.1■□□□□ 0.33
MSX2P35548 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 AC036111.1-201ENST00000533973 1582 ntBASIC17.1■□□□□ 0.33
MSX2P35548 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSX2P35548 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.1■□□□□ 0.33
MSX2P35548 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
MSX2P35548 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.09■□□□□ 0.33
MSX2P35548 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.09■□□□□ 0.33
MSX2P35548 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
MSX2P35548 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.09■□□□□ 0.33
MSX2P35548 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.09■□□□□ 0.33
MSX2P35548 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
MSX2P35548 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
MSX2P35548 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
MSX2P35548 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSX2P35548 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
MSX2P35548 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
MSX2P35548 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.08■□□□□ 0.33
MSX2P35548 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.08■□□□□ 0.33
MSX2P35548 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
MSX2P35548 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
MSX2P35548 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
MSX2P35548 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.08■□□□□ 0.32
MSX2P35548 KRT16P1-201ENST00000399124 1418 ntBASIC17.08■□□□□ 0.32
MSX2P35548 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.08■□□□□ 0.32
MSX2P35548 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.08■□□□□ 0.32
MSX2P35548 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.08■□□□□ 0.32
MSX2P35548 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
MSX2P35548 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.08■□□□□ 0.32
MSX2P35548 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
MSX2P35548 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.08■□□□□ 0.32
MSX2P35548 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
MSX2P35548 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.08■□□□□ 0.32
MSX2P35548 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
MSX2P35548 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.07■□□□□ 0.32
MSX2P35548 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.07■□□□□ 0.32
MSX2P35548 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 OR6D1P-203ENST00000641209 4860 ntBASIC17.07■□□□□ 0.32
MSX2P35548 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
MSX2P35548 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
MSX2P35548 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.07■□□□□ 0.32
MSX2P35548 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.07■□□□□ 0.32
MSX2P35548 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.07■□□□□ 0.32
MSX2P35548 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 AL031985.4-201ENST00000642138 673 ntBASIC17.07■□□□□ 0.32
MSX2P35548 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
MSX2P35548 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms