Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
BDNFP23560 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.83■□□□□ 0.61
BDNFP23560 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BDNFP23560 BICD1-207ENST00000551848 1962 ntBASIC18.83■□□□□ 0.61
BDNFP23560 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
BDNFP23560 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
BDNFP23560 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.83■□□□□ 0.6
BDNFP23560 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.83■□□□□ 0.6
BDNFP23560 AC096633.1-201ENST00000422446 749 ntBASIC18.83■□□□□ 0.6
BDNFP23560 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.83■□□□□ 0.6
BDNFP23560 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.83■□□□□ 0.6
BDNFP23560 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.83■□□□□ 0.6
BDNFP23560 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.83■□□□□ 0.6
BDNFP23560 AL121912.1-201ENST00000603683 238 ntBASIC18.83■□□□□ 0.6
BDNFP23560 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.83■□□□□ 0.6
BDNFP23560 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.83■□□□□ 0.6
BDNFP23560 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.83■□□□□ 0.6
BDNFP23560 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
BDNFP23560 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.83■□□□□ 0.6
BDNFP23560 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.83■□□□□ 0.6
BDNFP23560 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.82■□□□□ 0.6
BDNFP23560 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.82■□□□□ 0.6
BDNFP23560 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.82■□□□□ 0.6
BDNFP23560 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.82■□□□□ 0.6
BDNFP23560 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.82■□□□□ 0.6
BDNFP23560 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
BDNFP23560 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
BDNFP23560 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
BDNFP23560 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.82■□□□□ 0.6
BDNFP23560 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
BDNFP23560 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.81■□□□□ 0.6
BDNFP23560 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.81■□□□□ 0.6
BDNFP23560 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
BDNFP23560 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.81■□□□□ 0.6
BDNFP23560 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.81■□□□□ 0.6
BDNFP23560 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.81■□□□□ 0.6
BDNFP23560 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
BDNFP23560 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.81■□□□□ 0.6
BDNFP23560 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.81■□□□□ 0.6
BDNFP23560 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.81■□□□□ 0.6
BDNFP23560 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 NEFHP1-201ENST00000412845 2629 ntBASIC18.81■□□□□ 0.6
BDNFP23560 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.81■□□□□ 0.6
BDNFP23560 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
BDNFP23560 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.81■□□□□ 0.6
BDNFP23560 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 ABALON-201ENST00000629058 1903 ntBASIC18.8■□□□□ 0.6
BDNFP23560 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
BDNFP23560 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms