Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.03■□□□□ 0.32
COL5A1P20908 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL5A1P20908 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL5A1P20908 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.03■□□□□ 0.32
COL5A1P20908 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 AC003669.1-201ENST00000334569 611 ntBASIC17.03■□□□□ 0.32
COL5A1P20908 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 IGLL3P-201ENST00000412472 434 ntBASIC17.03■□□□□ 0.32
COL5A1P20908 TSEN15P1-201ENST00000423257 515 ntBASIC17.03■□□□□ 0.32
COL5A1P20908 AL645939.2-201ENST00000427340 991 ntBASIC17.03■□□□□ 0.32
COL5A1P20908 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL5A1P20908 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 SPCS2P1-201ENST00000561636 679 ntBASIC17.03■□□□□ 0.32
COL5A1P20908 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A1P20908 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A1P20908 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.02■□□□□ 0.32
COL5A1P20908 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A1P20908 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
COL5A1P20908 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.31
COL5A1P20908 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A1P20908 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.02■□□□□ 0.31
COL5A1P20908 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.31
COL5A1P20908 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.31
COL5A1P20908 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.02■□□□□ 0.31
COL5A1P20908 SNHG9-202ENST00000564014 471 ntBASIC17.02■□□□□ 0.31
COL5A1P20908 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.02■□□□□ 0.31
COL5A1P20908 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.02■□□□□ 0.31
COL5A1P20908 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.02■□□□□ 0.31
COL5A1P20908 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A1P20908 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A1P20908 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.02■□□□□ 0.31
COL5A1P20908 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.02■□□□□ 0.31
COL5A1P20908 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.02■□□□□ 0.31
COL5A1P20908 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL5A1P20908 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
COL5A1P20908 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.01■□□□□ 0.31
COL5A1P20908 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A1P20908 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.01■□□□□ 0.31
COL5A1P20908 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
COL5A1P20908 AC019129.2-201ENST00000609837 1235 ntBASIC17.01■□□□□ 0.31
COL5A1P20908 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
COL5A1P20908 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL5A1P20908 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.01■□□□□ 0.31
COL5A1P20908 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL5A1P20908 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17■□□□□ 0.31
COL5A1P20908 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 AP002472.1-201ENST00000577490 586 ntBASIC17■□□□□ 0.31
COL5A1P20908 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 SIRPAP1-201ENST00000448467 1770 ntBASIC17■□□□□ 0.31
COL5A1P20908 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A1P20908 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 CD82-202ENST00000342935 967 ntTSL 5 BASIC17■□□□□ 0.31
COL5A1P20908 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17■□□□□ 0.31
COL5A1P20908 RHOQP3-201ENST00000437982 621 ntBASIC17■□□□□ 0.31
COL5A1P20908 VN2R19P-201ENST00000442399 1052 ntBASIC17■□□□□ 0.31
COL5A1P20908 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17■□□□□ 0.31
COL5A1P20908 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms