Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.7■□□□□ 0.74
MMP3P08254 KLF4P1-201ENST00000412782 1185 ntBASIC19.7■□□□□ 0.74
MMP3P08254 ELK2BP-201ENST00000415014 1224 ntBASIC19.7■□□□□ 0.74
MMP3P08254 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
MMP3P08254 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.7■□□□□ 0.74
MMP3P08254 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
MMP3P08254 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.7■□□□□ 0.74
MMP3P08254 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.7■□□□□ 0.74
MMP3P08254 AL691403.2-201ENST00000618460 490 ntBASIC19.7■□□□□ 0.74
MMP3P08254 AC004706.3-202ENST00000621574 984 ntBASIC19.7■□□□□ 0.74
MMP3P08254 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP3P08254 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP3P08254 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP3P08254 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP3P08254 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP3P08254 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.7■□□□□ 0.74
MMP3P08254 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MMP3P08254 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
MMP3P08254 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.7■□□□□ 0.74
MMP3P08254 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.7■□□□□ 0.74
MMP3P08254 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
MMP3P08254 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.69■□□□□ 0.74
MMP3P08254 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.69■□□□□ 0.74
MMP3P08254 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 AC064836.3-201ENST00000607928 673 ntBASIC19.69■□□□□ 0.74
MMP3P08254 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.69■□□□□ 0.74
MMP3P08254 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 AC135776.1-201ENST00000319817 2481 ntBASIC19.69■□□□□ 0.74
MMP3P08254 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
MMP3P08254 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
MMP3P08254 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MMP3P08254 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 AC003669.1-201ENST00000334569 611 ntBASIC19.68■□□□□ 0.74
MMP3P08254 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
MMP3P08254 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.68■□□□□ 0.74
MMP3P08254 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.68■□□□□ 0.74
MMP3P08254 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.68■□□□□ 0.74
MMP3P08254 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.68■□□□□ 0.74
MMP3P08254 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.68■□□□□ 0.74
MMP3P08254 AC006504.4-201ENST00000592118 1568 ntBASIC19.68■□□□□ 0.74
MMP3P08254 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.68■□□□□ 0.74
MMP3P08254 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.68■□□□□ 0.74
MMP3P08254 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MMP3P08254 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.67■□□□□ 0.74
MMP3P08254 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.67■□□□□ 0.74
MMP3P08254 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
MMP3P08254 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MMP3P08254 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.67■□□□□ 0.74
MMP3P08254 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.67■□□□□ 0.74
MMP3P08254 AC004832.2-201ENST00000426397 482 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms